DNA microarray detection of antimicrobial resistance genes in diverse bacteria
Study published at http://cat.inist.fr/?aModele=afficheN&cpsidt=17459830
High throughput genotyping is essential for studying the spread of multiple antimicrobial resistance. A test oligonucleotide microarray designed to detect 94 antimicrobial resistance genes was constructed and successfully used to identify antimicrobial resistance genes in control strains. The microarray was then used to assay 51 distantly related bacteria, including Gram-negative and Gram-positive isolates, resulting in the identification of 61 different antimicrobial resistance genes in these bacteria. These results were consistent with their known gene content and resistance phenotypes. Microarray results were confirmed by polymerase chain reaction and Southern blot analysis. These results demonstrate that this approach could be used to construct a microarray to detect all sequenced antimicrobial resistance genes in nearly all bacteria.
Filed under: Clinical microarrays, DNA, DNA microarray, Oligo, Pharmacogenomics, RNA microarray, bacteria, bioinformatics, bioinformatics blog, clinical diagnostics, clinical microarray, custom microarray, drug resistance, epigenetics, gene expression, genetics, genotyping, microaray blog, microarray, microarray analysis, microarray analysis software, microarray for clinical diagnostics
DNA microarray detection of antimicrobial resistance genes in diverse bacteria
Study published at http://cat.inist.fr/?aModele=afficheN&cpsidt=17459830
High throughput genotyping is essential for studying the spread of multiple antimicrobial resistance. A test oligonucleotide microarray designed to detect 94 antimicrobial resistance genes was constructed and successfully used to identify antimicrobial resistance genes in control strains. The microarray was then used to assay 51 distantly related bacteria, including Gram-negative and Gram-positive isolates, resulting in the identification of 61 different antimicrobial resistance genes in these bacteria. These results were consistent with their known gene content and resistance phenotypes. Microarray results were confirmed by polymerase chain reaction and Southern blot analysis. These results demonstrate that this approach could be used to construct a microarray to detect all sequenced antimicrobial resistance genes in nearly all bacteria.
Filed under: Clinical microarrays, DNA, DNA microarray, Oligo, Pharmacogenomics, RNA microarray, bacteria, bioinformatics, bioinformatics blog, clinical diagnostics, clinical microarray, custom microarray, drug resistance, epigenetics, gene expression, genetics, genotyping, microaray blog, microarray, microarray analysis, microarray analysis software, microarray for clinical diagnostics